Stem-loop cme-MIR396e

Accession

MI0023266

Description

Cucumis melo cme-MIR396e precursor miRNA

Sequence

266838 reads, 72574.0 reads per million, 26 experiments

cuuuguauucUUCCACGGCUUUCUUGAACUGcauuucauuaucugaucuuucucuucuuccaauuauaucuuuuuacaauacauacauauauauauauauauauauauauacguauuccucuugcuaugaauuucaauggcugcaGUUCAAUAAAGCUGUGGGAAGAuacaaua
..(((((((.((((((((((((.((((((((((..(((.....)))....................................((((.((((((((((....)))))))))).)))).......(((((........))))))))))))))).)))))))))))).)))))))..

Structure

cu       c            C          uuucauuaucugaucuuucucuucuuccaauuauaucuuuuuacaauac    a          u 
  uuguauu UUCCACGGCUUU UUGAACUGca                                                 auac uauauauaua a
  ||||||| |||||||||||| ||||||||||                                                 |||| ||||||||||  
  aacauAG AGGGUGUCGAAA AACUUGacgu                                                 uaug auauauauau u
au       A            U          ------------------------cgguaacuuuaaguaucguucuccu    c          a 

Annotation confidence High

Genome context

Unknown

Mature cme-miR396e-5p

• Accession: MIMAT0026162
• Description: Cucumis melo cme-miR396e-5p mature miRNA
• Sequence: 11 - UUCCACGGCUUUCUUGAACUG - 31
• Evidence: not_experimental

Mature cme-miR396e-3p

• Accession: MIMAT0057895
• Description: Cucumis melo cme-miR396e-3p mature miRNA
• Sequence: 146 - GUUCAAUAAAGCUGUGGGAAGA - 167
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877