Stem-loop cme-MIR167d

Accession

MI0023267

Description

Cucumis melo cme-MIR167d precursor miRNA

Literature search

1 open access papers mention cme-MIR167d
(2 sentences)

Sequence

2744 reads, 1415.0 reads per million, 26 experiments

uuugagagguUGAAGCUGCCAGCAUGAUCUGauuuaauuugcugaauucucuuuuaauuuagagauuuucauaaagcaauauuauugaaauuaauaaggcaaaaaauggguuuucuucuauggaucuugaugauguuaugcuuuucaaggguuuuuuuuuuuaauuugaaaaUCAGGUCAUUCUAGCAGCUUCAAUcacucauu
..((((.((((((((((((.((.((((((((((((.......((((.(((((........)))))..)))).((((((((((((((((.(((.((((((.((((......))))))).))).))).))))))))))..))))))(((((...............))))))))))))))))).)).)))))))))))).))))..

Structure

uu    a            C  C            aauuugcugaauucucuuuuaauuuagagauuuucau      --          a   a   -   c    aa 
  ugag gguUGAAGCUGC AG AUGAUCUGauuu                                     aaagca  auauuauuga auu aua agg aaaa  u
  |||| |||||||||||| || ||||||||||||                                     ||||||  |||||||||| ||| ||| ||| ||||   
  acuc cUAACUUCGACG UC UACUGGACUaaa                                     uuucgu  uguaguaguu uag uau uuc uuuu  g
uu    a            A  U            ------------aguuuaauuuuuuuuuuugggaacu      au          c   g   c   -    gg 

Annotation confidence High

Genome context

Unknown

Mature cme-miR167d-5p

• Accession: MIMAT0026163
• Description: Cucumis melo cme-miR167d-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUG - 31
• Evidence: not_experimental

Mature cme-miR167d-3p

• Accession: MIMAT0057896
• Description: Cucumis melo cme-miR167d-3p mature miRNA
• Sequence: 173 - UCAGGUCAUUCUAGCAGCUUCAAU - 196
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877