Stem-loop cme-MIR2111b

Accession

MI0023273

Description

Cucumis melo cme-MIR2111b precursor miRNA

Sequence

1290 reads, 1103.0 reads per million, 26 experiments

uaggaucuggUAAUCUGCAUCCUGAGGUUUAgggaguucaaaauauuaaugauggguggguuugagggugcaaagccaauaacaaaaaagauaacaaauuauuggccaaagcucuugauuuugauucauuuugagcuauuuugccuacauauuccccugauuauguguuucucuaGUCCUUGGGAUGCAGAUUAUCucuuccug
(((((...(((((((((((((((((((.(((((((......(((((..(((((.((.(((..((.(((.(((((((((((((................))))))))...(((((..(((........)))..)))))..))))))).).))..))))).))))))))))))))))).)))))))))))))))))))...)))))

Structure

     ucu                   U       guucaa     ua     g  u   uu  a -  u     ---------------------------------        caaaaaa 
uagga   ggUAAUCUGCAUCCUGAGG UUAggga      aauau  augau gg ggg  ug g gg gcaaa                                 gccaauaa       g
|||||   ||||||||||||||||||| |||||||      |||||  ||||| || |||  || | || |||||                                 ||||||||        
guccu   CUAUUAGACGUAGGGUUCC Gaucucu      uugug  uauua uc ccc  au c uc cguuu                                 cgguuauu       a
     ucu                   U       ------     --     g  -   uu  a a  -     uaucgaguuuuacuuaguuuuaguucucgaaac        aaacaau 

Annotation confidence High

Genome context

Unknown

Mature cme-miR2111b-5p

• Accession: MIMAT0026169
• Description: Cucumis melo cme-miR2111b-5p mature miRNA
• Sequence: 11 - UAAUCUGCAUCCUGAGGUUUA - 31
• Evidence: not_experimental

Mature cme-miR2111b-3p

• Accession: MIMAT0057898
• Description: Cucumis melo cme-miR2111b-3p mature miRNA
• Sequence: 176 - GUCCUUGGGAUGCAGAUUAUC - 196
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877