Stem-loop cme-MIR398a

Accession

MI0023278

Description

Cucumis melo cme-MIR398a precursor miRNA

Sequence

22311 reads, 18011.0 reads per million, 26 experiments

ccuacaUGGUCGUCCUGAGAAUACAUGucacuguauugucugaauaacauucagcaaguaacauucaacaUGUGUUCUCAGGUCGCCCCUGcaggcuuuu
(((.((.((.((.(((((((((((((((...(((.(((.((((((...)))))))))...)))....))))))))))))))).)).)).)).))).....

Structure

-----   a  U  U  U               -cac   --a   u      a 
     ccu ca GG CG CCUGAGAAUACAUGu    ugu   uug cugaau  
     ||| || || || |||||||||||||||    |||   ||| |||||| a
     gga GU CC GC GGACUCUUGUGUaca    aca   aac gacuua  
uuuuc   c  C  C  U               acuu   aug   -      c 

Annotation confidence High

Genome context

Unknown

Mature cme-miR398a-5p

• Accession: MIMAT0057900
• Description: Cucumis melo cme-miR398a-5p mature miRNA
• Sequence: 7 - UGGUCGUCCUGAGAAUACAUG - 27
• Evidence: experimental ; unknown

Mature cme-miR398a-3p

• Accession: MIMAT0026174
• Description: Cucumis melo cme-miR398a-3p mature miRNA
• Sequence: 71 - UGUGUUCUCAGGUCGCCCCUG - 91
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877