Stem-loop cme-MIR169r

Accession

MI0023279

Description

Cucumis melo cme-MIR169r precursor miRNA

Literature search

1 open access papers mention cme-MIR169r
(1 sentences)

Sequence

4511 reads, 2243.0 reads per million, 24 experiments

aguggaacauGAGCCAAGAAUGACUUGCCGGccgacuuucgacaccucucguuuugugguCGGCACGGUCUUCUUCGGCUCUUguucccuc
((.((((((.((((((((((.(((((((((((((.....(((......))).....))))))))).))))))))).))))).)))))))).

Structure

-  u      u     -     U    -         acuuu   ca 
 ag ggaaca GAGCC AAGAA GACU UGCCGGccg     cga  c
 || |||||| ||||| ||||| |||| |||||||||     |||   
 uc ccuugU CUCGG UUCUU CUGG ACGGCuggu     gcu  c
c  -      U     C     -    C         guuuu   cu 

Annotation confidence High

Genome context

Unknown

Mature cme-miR169r-5p

• Accession: MIMAT0026175
• Description: Cucumis melo cme-miR169r-5p mature miRNA
• Sequence: 11 - GAGCCAAGAAUGACUUGCCGG - 31
• Evidence: not_experimental

Mature cme-miR169r-3p

• Accession: MIMAT0057901
• Description: Cucumis melo cme-miR169r-3p mature miRNA
• Sequence: 61 - CGGCACGGUCUUCUUCGGCUCUU - 83
• Evidence: experimental ; unknown

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877