Stem-loop ccr-mir-25

Accession

MI0023381

Description

Cyprinus carpio ccr-mir-25 precursor miRNA

Literature search

2 open access papers mention ccr-mir-25
(2 sentences)

Sequence

488455 reads, 2931.0 reads per million, 33 experiments

uagcugguguugagAGGCGGAGACUUGGGCAGUUGCUggcuuucccacaaggCAUUGCACUUGUCUCGGUCUGAcagugccggcacaacucaucu
..((((((((((..((((.(((((..(.(((((.(((((.....))....)))))))).)..))))).))))..))))))))))...........

Structure

---------ua          ag    G     UU G     U   ----  c 
           gcugguguug  AGGC GAGAC  G GCAGU GCU    gg u
           ||||||||||  |||| |||||  | ||||| |||    || u
           cggccgugac  UCUG CUCUG  C CGUUA Cgg    cc u
ucuacucaaca          AG    G     UU A     -   aaca  c 

Annotation confidence High

Genome context

Unknown

Mature ccr-miR-25-5p

• Accession: MIMAT0058320
• Description: Cyprinus carpio ccr-miR-25-5p mature miRNA
• Sequence: 15 - AGGCGGAGACUUGGGCAGUUGCU - 37
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-25-3p

• Accession: MIMAT0026280
• Description: Cyprinus carpio ccr-miR-25-3p mature miRNA
• Sequence: 53 - CAUUGCACUUGUCUCGGUCUGA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925