Stem-loop bma-mir-5838-1

Accession

MI0023433

Description

Brugia malayi bma-mir-5838-1 precursor miRNA

Literature search

1 open access papers mention bma-mir-5838-1
(3 sentences)

Sequence

aauaacaaauguccggcuacguUGCUAAACCGUAAAUGCUCCUAauguuuuuaauaauaaucuaUGAGUAUUUUCGGUUUCGCAUCcuagcaggaacaaauggcggau
.....((..(((((.((((.(.(((.((((((.((((((((.((.((((......))))...)).)))))))).)))))).))).).)))).)).)))..))......

Structure

-aauaa  aa   -  g    c u   U      U        C  --a    uu 
      ca  ugu cc gcua g UGC AAACCG AAAUGCUC UA   uguu  u
      ||  ||| || |||| | ||| |||||| |||||||| ||   ||||   
      gu  aca gg cgau C ACG UUUGGC UUUAUGAG au   auaa  a
uaggcg  aa   a  a    c U   C      U        U  cua    ua 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold316: 10123-10230 [+]

Mature bma-miR-5838-3p

• Accession: MIMAT0026336
• Description: Brugia malayi bma-miR-5838-3p mature miRNA
• Sequence: 65 - UGAGUAUUUUCGGUUUCGCAUC - 86
• Evidence: not_experimental

Mature bma-miR-5838-5p

• Accession: MIMAT0037476
• Description: Brugia malayi bma-miR-5838-5p mature miRNA
• Sequence: 23 - UGCUAAACCGUAAAUGCUCCUA - 44
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498