Stem-loop bma-mir-5840

Accession

MI0023435

Description

Brugia malayi bma-mir-5840 precursor miRNA

Sequence

16459 reads, 6834.0 reads per million, 26 experiments

aauacuaugaauugcuacgauaAAGGAUAGUAAUCCACAGUUGCGCuugaaauuuaugaaaugcACACUGGGACUACUAUUCUCUUuaguagcaauaucaauuauugc
.......(((((((((((.....(((((((((.(((.((((((((.((.(......).)).)))).))))))).))))))))).....)))))))).)))........

Structure

-aauacua   -        gauaA         A   A    -    C  g aa 
        uga auugcuac     AGGAUAGUA UCC CAGU UGCG uu a  u
        ||| ||||||||     ||||||||| ||| |||| |||| || |   
        acu uaacgaug     UCUUAUCAU AGG GUCA Acgu aa u  u
cguuauua   a        auUUC         C   -    C    a  g au 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold153: 6986-7093 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from bma-mir-5840

Mature bma-miR-5840-5p

• Accession: MIMAT0057221
• Description: Brugia malayi bma-miR-5840-5p mature miRNA
• Sequence: 23 - AAGGAUAGUAAUCCACAGUUGCGC - 46
• Evidence: experimental ; Illumina [2]

Mature bma-miR-5840-3p

• Accession: MIMAT0026338
• Description: Brugia malayi bma-miR-5840-3p mature miRNA
• Sequence: 65 - ACACUGGGACUACUAUUCUCUU - 86
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498