Stem-loop bma-mir-5842

Accession

MI0023438

Description

Brugia malayi bma-mir-5842 precursor miRNA

Literature search

1 open access papers mention bma-mir-5842
(5 sentences)

Sequence

ucauuuaaucuuccauuacacaucCGAUGGAUACAUCCUGCUAGUUgguuaagccuggugaaCUAGUAGGAUGUAUCCAUCAGAuguaacugauucauugagaugugaaaaa
((((...(((((..((((.(((((.(((((((((((((((((((((.((((....)))).))))))))))))))))))))).)))))...)))).....)))))))))....

Structure

----    uua     ---cc    --c     C                     g    a 
    ucau   aucuu     auua   acauc GAUGGAUACAUCCUGCUAGUU guua g
    ||||   |||||     ||||   ||||| ||||||||||||||||||||| ||||  
    agug   uagag     uagu   uguAG CUACCUAUGUAGGAUGAUCaa uggu c
aaaa    ---     uuacu    caa     A                     g    c 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold3: 1088154-1088265 [-]

Mature bma-miR-5842-3p

• Accession: MIMAT0026340
• Description: Brugia malayi bma-miR-5842-3p mature miRNA
• Sequence: 63 - CUAGUAGGAUGUAUCCAUCAGA - 84
• Evidence: experimental ; Illumina [2]

Mature bma-miR-5842-5p

• Accession: MIMAT0037479
• Description: Brugia malayi bma-miR-5842-5p mature miRNA
• Sequence: 25 - CGAUGGAUACAUCCUGCUAGUU - 46
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498