Stem-loop bma-mir-5844

Accession

MI0023440

Description

Brugia malayi bma-mir-5844 precursor miRNA

Literature search

1 open access papers mention bma-mir-5844
(1 sentences)

Sequence

ggaacuuccccugucuuucuugcuuuuuguuauuguaguugcuauagacgaaugcguuacaugaaaggucuauugUAACGACUUUAUUUGAUAGCAACCAcgauacaaaucuaaacggagaa
(((...)))....(((((.((....(((((.(((((.(((((((((((.(((..(((((((............)))))))..))).))).)))))))).))))))))))....)).))))).

Structure

ggaacuuccccug     c  gcuu     u     a        -   c   ug       ugaaa 
             ucuuu uu    uuugu auugu guugcuau aga gaa  cguuaca     g
             ||||| ||    ||||| ||||| |||||||| ||| |||  |||||||      
             agagg aa    aaaca uagcA CAACGAUA UUU UUU  GCAAUgu     g
------------a     c  aucu     -     C        G   A   CA       uaucu 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold8: 203709-203830 [+]

Mature bma-miR-5844

• Accession: MIMAT0026342
• Description: Brugia malayi bma-miR-5844 mature miRNA
• Sequence: 76 - UAACGACUUUAUUUGAUAGCAACCA - 100
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498