Stem-loop bma-mir-5845

Accession

MI0023441

Description

Brugia malayi bma-mir-5845 precursor miRNA

Sequence

agaaugacuggaacagauguauuucgguuuuaagauacaaaaccaugcaucuggaaaugAUUUUGUAUCAGUAAACCGGAAUcuauccgugacaaacucaccacca
....(((.((..((.((((.((((((((((...(((((((((.(((..........))).)))))))))...)))))))))).)))).))..))...)))......

Structure

--agaa   --c  ga  a    u          uaa         c   gcau 
      uga   ug  ac gaug auuucgguuu   gauacaaaa cau    c
      |||   ||  || |||| ||||||||||   ||||||||| |||     
      acu   ac  ug cuau UAAGGCCAAA   CUAUGUUUU gua    u
accacc   caa  ag  c    c          UGA         A   aagg 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold6: 1914693-1914798 [+]

Mature bma-miR-5845

• Accession: MIMAT0026343
• Description: Brugia malayi bma-miR-5845 mature miRNA
• Sequence: 60 - AUUUUGUAUCAGUAAACCGGAAU - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498