Stem-loop bma-mir-2i

Accession

MI0023448

Description

Brugia malayi bma-mir-2i precursor miRNA

Literature search

3 open access papers mention bma-mir-2i
(34 sentences)

Sequence

aaaaauuagcaucgguaacggucGCUGCAUCGUCUGAGUUAUGCgguuguuucuuguuuugcaUAUCGCAGAAUCGAUGCAGCAUacugugcugugugcuuauaucacau
.......((((((((((.((((.(((((((((((((.(.(((((((............))))))).).))))..)))))))))..))))))))).)))))..........

Structure

---aaaaauu     -     a    -c         --    A U       uuguu 
          agcau cggua cggu  GCUGCAUCG  UCUG G UAUGCgg     u
          ||||| ||||| ||||  |||||||||  |||| | |||||||      
          ucgug gucgu guca  CGACGUAGC  AGAC C AUacguu     c
uacacuauau     u     -    UA         UA    G U       uuguu 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold153: 16336-16445 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from bma-mir-2i

Mature bma-miR-2i-5p

• Accession: MIMAT0026348
• Description: Brugia malayi bma-miR-2i-5p mature miRNA
• Sequence: 24 - GCUGCAUCGUCUGAGUUAUGC - 44
• Evidence: experimental ; Illumina [2]

Mature bma-miR-2i-3p

• Accession: MIMAT0037480
• Description: Brugia malayi bma-miR-2i-3p mature miRNA
• Sequence: 64 - UAUCGCAGAAUCGAUGCAGCAU - 85
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498