Stem-loop bma-mir-5851

Accession

MI0023449

Description

Brugia malayi bma-mir-5851 precursor miRNA

Sequence

gucugaguaucauacaugcagugaauugucucaagcauauacagcccugaUUCGCAAUUCAUGGAUGUAUgcuacucaga
.((((((((.(((((((.((.((((((((.(((.((.......))..)))...)))))))))).))))))).))))))))

Structure

g        u       g  g        --c   -a  au 
 ucugagua cauacau ca ugaauugu   uca  gc  a
 |||||||| ||||||| || ||||||||   |||  ||  u
 agacucau gUAUGUA GU ACUUAACG   agu  cg  a
-        c       G  -        CUU   cc  ac 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold256: 14564-14643 [+]

Mature bma-miR-5851

• Accession: MIMAT0026349
• Description: Brugia malayi bma-miR-5851 mature miRNA
• Sequence: 51 - UUCGCAAUUCAUGGAUGUAU - 70
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4