Stem-loop bma-mir-5852

Accession

MI0023450

Description

Brugia malayi bma-mir-5852 precursor miRNA

Sequence

gaauuaucuuguucggauuauuaaggagagcaaauguuuuaaggauaAUCUGCUGUUCUUAAUAUUCUGAacaguaaugc
..(((((..((((((((.(((((((((.((((.((..((....))..)).)))).))))))))).)))))))))))))..

Structure

ga     cu        u         g    a  gu  u 
  auuau  uguucgga uauuaagga agca au  uu a
  |||||  |||||||| ||||||||| |||| ||  ||  
  uaaug  acaAGUCU AUAAUUCUU UCGU UA  ag a
cg     --        U         G    C  au  g 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold166: 19565-19644 [-]

Mature bma-miR-5852

• Accession: MIMAT0026350
• Description: Brugia malayi bma-miR-5852 mature miRNA
• Sequence: 48 - AUCUGCUGUUCUUAAUAUUCUGA - 70
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498