miRBase entry: bma-mir-5855

Stem-loop bma-mir-5855


Accession
MI0023453
Description
Brugia malayi bma-mir-5855 precursor miRNA

Literature search
1 open access papers mention bma-mir-5855
(1 sentences)

Sequence


uuugcgagcaguaguuccuaucaaaaaauauuguucaaaauaacugagUAAUAUUUCGAGAUAGAAACCACugccggcaua
..(((..(((((.(((.(((((...((((((((((((.......))))))))))))...))))).))).)))))..)))..

Structure
uu   ga     a   c     aaa            aa 
  ugc  gcagu guu cuauc   aaauauuguuca  a
  |||  ||||| ||| |||||   ||||||||||||  u
  acg  cguCA CAA GAUAG   UUUAUAAUgagu  a
au   gc     C   A     AGC            ca 


Annotation confidence Low
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold14: 502175-502255 [+]

Database links

Mature bma-miR-5855

Accession MIMAT0026353
Description Brugia malayi bma-miR-5855 mature miRNA
Sequence 49 - UAAUAUUUCGAGAUAGAAACCAC - 71
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498