Stem-loop bma-mir-5855

Accession

MI0023453

Description

Brugia malayi bma-mir-5855 precursor miRNA

Literature search

1 open access papers mention bma-mir-5855
(1 sentences)

Sequence

uuugcgagcaguaguuccuaucaaaaaauauuguucaaaauaacugagUAAUAUUUCGAGAUAGAAACCACugccggcaua
..(((..(((((.(((.(((((...((((((((((((.......))))))))))))...))))).))).)))))..)))..

Structure

uu   ga     a   c     aaa            aa 
  ugc  gcagu guu cuauc   aaauauuguuca  a
  |||  ||||| ||| |||||   ||||||||||||  u
  acg  cguCA CAA GAUAG   UUUAUAAUgagu  a
au   gc     C   A     AGC            ca 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold14: 502175-502255 [+]

Mature bma-miR-5855

• Accession: MIMAT0026353
• Description: Brugia malayi bma-miR-5855 mature miRNA
• Sequence: 49 - UAAUAUUUCGAGAUAGAAACCAC - 71
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498