Stem-loop bma-mir-5856a

Accession

MI0023454

Description

Brugia malayi bma-mir-5856a precursor miRNA

Sequence

gcuaauagaagcaacucuguguguagcauucgguauacacucucauaCCGAAUGCUACACACGGAGUUGCuucuugauuu
......((((((((((((((((((((((((((((((........))))))))))))))))))))))))))))))......

Structure

gcuaau                              aca 
      agaagcaacucuguguguagcauucgguau   c
      ||||||||||||||||||||||||||||||    
      ucuuCGUUGAGGCACACAUCGUAAGCCaua   u
uuuagu                              cuc 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold2: 198264-198343 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5856a

Mature bma-miR-5856a

• Accession: MIMAT0026354
• Description: Brugia malayi bma-miR-5856a mature miRNA
• Sequence: 48 - CCGAAUGCUACACACGGAGUUGC - 70
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4