miRBase entry: bma-mir-5856a

Stem-loop bma-mir-5856a

Accession

MI0023454

Description

Brugia malayi bma-mir-5856a precursor miRNA

Sequence

gcuaauagaagcaacucuguguguagcauucgguauacacucucauaCCGAAUGCUACACACGGAGUUGCuucuugauuu
......((((((((((((((((((((((((((((((........))))))))))))))))))))))))))))))......

Structure

gcuaau                              aca 
      agaagcaacucuguguguagcauucgguau   c
      ||||||||||||||||||||||||||||||    
      ucuuCGUUGAGGCACACAUCGUAAGCCaua   u
uuuagu                              cuc

Annotation confidence Not enough data

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Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold2: 198264-198343 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5856a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-miR-5856a

Accession	MIMAT0026354
Description	Brugia malayi bma-miR-5856a mature miRNA
Sequence	48 - CCGAAUGCUACACACGGAGUUGC - 70
Evidence	not_experimental

References

PubMed ID: 22216965
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
BMC Genomics (2012) 13:4