Stem-loop bma-mir-5857

Accession

MI0023456

Description

Brugia malayi bma-mir-5857 precursor miRNA

Sequence

acuuguuaggAAGUUUUUUGGGAUUUGCUGAGGAggauucgaacuucuccuccggauucccaccgaacuucucucucguug
........((((((((..(((((..(.(.((((((((.......)))))))).).).)))))..)))))))).........

Structure

-acuuguua        UU     UU G U        uu 
         ggAAGUUU  UGGGA  U C GAGGAgga  c
         ||||||||  |||||  | | ||||||||  g
         ucuucaag  acccu  a g cuccucuu  a
guugcucuc        cc     -u g c        ca 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold16: 282284-282364 [-]

Mature bma-miR-5857

• Accession: MIMAT0026356
• Description: Brugia malayi bma-miR-5857 mature miRNA
• Sequence: 11 - AAGUUUUUUGGGAUUUGCUGAGGA - 34
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4