Stem-loop bma-mir-2g

Accession

MI0023459

Description

Brugia malayi bma-mir-2g precursor miRNA

Literature search

3 open access papers mention bma-mir-2g
(30 sentences)

Sequence

auacaaguuuagcAUAUCACAAACAAAAUUCUGGaagugugccAGAAUUUUGUUUGUGAUAAGAUaaauuugcaa
...((((((((.(.((((((((((((((((((((.......)))))))))))))))))))).).))))))))...

Structure

aua        g A                    aa 
   caaguuua c UAUCACAAACAAAAUUCUGG  g
   |||||||| | ||||||||||||||||||||  u
   guuuaaaU G AUAGUGUUUGUUUUAAGAcc  g
aac        A A                    gu 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold6: 1487667-1487741 [-]

Mature bma-miR-2g-3p

• Accession: MIMAT0026359
• Description: Brugia malayi bma-miR-2g-3p mature miRNA
• Sequence: 44 - AGAAUUUUGUUUGUGAUAAGAU - 65
• Evidence: not_experimental

Mature bma-miR-2g-5p

• Accession: MIMAT0037482
• Description: Brugia malayi bma-miR-2g-5p mature miRNA
• Sequence: 14 - AUAUCACAAACAAAAUUCUGG - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498