Stem-loop bma-mir-5862

Accession

MI0023462

Description

Brugia malayi bma-mir-5862 precursor miRNA

Sequence

ugcuucccgccuugcgaacggcucacucAUAUCGUGUGCUGGAGGUCAGGgugcaugccUGACCUCCAUUACAAGAUAUGAgugaggaucgaauuccaugcaggucagcuca
.(((.((.((..((.((((((((((((((((((.((((.(((((((((((.......))))))))))).)))).))))))))))))..)))..))))).)).))..)))...

Structure

--u   -u  c  cu  c   --   --            G    C           gu 
   gcu  cc gc  ug gaa  cgg  cucacucAUAUC UGUG UGGAGGUCAGG  g
   |||  || ||  || |||  |||  |||||||||||| |||| |||||||||||  c
   cga  gg cg  ac cuu  gcu  gagugAGUAUAG ACAU ACCUCCAGUcc  a
acu   cu  a  -u  -   aa   ag            A    U           gu 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold19: 415158-415269 [-]

Mature bma-miR-5862-5p

• Accession: MIMAT0026361
• Description: Brugia malayi bma-miR-5862-5p mature miRNA
• Sequence: 29 - AUAUCGUGUGCUGGAGGUCAGG - 50
• Evidence: not_experimental

Mature bma-miR-5862-3p

• Accession: MIMAT0037483
• Description: Brugia malayi bma-miR-5862-3p mature miRNA
• Sequence: 60 - UGACCUCCAUUACAAGAUAUGA - 81
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498