miRBase entry: bma-mir-5864

Stem-loop bma-mir-5864


Accession
MI0023466
Description
Brugia malayi bma-mir-5864 precursor miRNA


Sequence

3390 reads, 117.0 reads per million, 24 experiments
auucgggguucgauucuugggugUACCAGUGAUGAAAUGACGuuaaucugcuguucacguagugaucauaCGUUUGAAGUGAACGUUUGUCAUAagucugaggucguaucauccagggagauucauuc
.....(((((...((((((((((((((((..((((...((((((....((((....(((((.......)))))....))))))))))..))))....))).....))).)))))))))))))))....

Structure
auucg     cga          -   -----   --UG    AAU      aauc    guuc     gu 
     ggguu   uucuugggug UAC     CAG    AUGA   GACGuu    ugcu    acgua  g
     |||||   |||||||||| |||     |||    ||||   ||||||    ||||    |||||  a
     cuuag   agggaccuac aug     guc    UACU   UUGCAA    GUGA    UGCau  u
-cuua     ---          u   cugga   ugaA    -GU      ----    AGUU     ac 


Annotation confidence Low
Do you think this miRNA is real?
Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold152: 66233-66360 [+]

Database links

Mature bma-miR-5864-5p

Accession MIMAT0057229
Description Brugia malayi bma-miR-5864-5p mature miRNA
Sequence 24 - UACCAGUGAUGAAAUGACG - 42
Evidence not_experimental

Mature bma-miR-5864-3p

Accession MIMAT0026363
Description Brugia malayi bma-miR-5864-3p mature miRNA
Sequence 71 - CGUUUGAAGUGAACGUUUGUCAUA - 94
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4