Stem-loop bma-mir-5864

Accession

MI0023466

Description

Brugia malayi bma-mir-5864 precursor miRNA

Sequence

auucgggguucgauucuuggguguaccagugaugaaaugacguuaaucugcuguucacguagugaucauacguuUGAAGUGAACGUUUGUCAUAAGUCUGAGGUCGuaucauccagggagauucauuc
.....(((((...((((((((((((((((..((((...((((((....((((....(((((.......)))))....))))))))))..))))....))).....))).)))))))))))))))....

Structure

auucg     cga          -   -----   --ug    aau      aauc    guuc     gu 
     ggguu   uucuugggug uac     cag    auga   gacguu    ugcu    acgua  g
     |||||   |||||||||| |||     |||    ||||   ||||||    ||||    |||||  a
     cuuag   agggaccuac auG     GUC    UACU   UUGCAA    GUGA    ugcau  u
-cuua     ---          u   CUGGA   UGAA    -GU      ----    AGUu     ac 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold152: 66233-66360 [+]

Mature bma-miR-5864

• Accession: MIMAT0026363
• Description: Brugia malayi bma-miR-5864 mature miRNA
• Sequence: 75 - UGAAGUGAACGUUUGUCAUAAGUCUGAGGUCG - 106
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4