Stem-loop bma-mir-5865

Accession

MI0023467

Description

Brugia malayi bma-mir-5865 precursor miRNA

Sequence

aaguaauacgaaguucaucaaaaguccauggcacugugaaaaguuggggucacaguaacugugauguugucauUCUAACUUUCAUUGUGCUAUGGAuuucugaugaccaauaaagcauaucguuggauaag
..............((((((.(((((((((((((.((((((.(((((((((((((...)))))))........)))))))))))).))))))))))))).))))))(((((..........))))).....

Structure

-----------aaguaauacgaagu      a             u      a      --------       u 
                         ucauca aaguccauggcac gugaaa guuggg        gucacag  
                         |||||| ||||||||||||| |||||| ||||||        ||||||| a
                         aguagu uuuAGGUAUCGUG UACUUU CAAUCU        uaguguc  
gaauagguugcuauacgaaauaacc      c             U      -      uacuguug       a 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold148: 20001-20131 [+]

Mature bma-miR-5865

• Accession: MIMAT0026364
• Description: Brugia malayi bma-miR-5865 mature miRNA
• Sequence: 74 - UCUAACUUUCAUUGUGCUAUGGA - 96
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4