Stem-loop bma-mir-5866

Accession

MI0023468

Description

Brugia malayi bma-mir-5866 precursor miRNA

Literature search

3 open access papers mention bma-mir-5866
(10 sentences)

Sequence

1186892 reads, 17436.0 reads per million, 26 experiments

cugucacaugaaguaggacaaguGAGAUUGAUUUUCACUGGUACCUuugcaguauguagUUACCAUGUUGAUCGAUCUCCAuuguucguguucguuuuacccuua
.......(((((...((((((..((((((((((..((.(((((...(((((...))))).)))))))..))))))))))..))))))...)))))..........

Structure

---cugucac     gua      gu          UU  C     CCU     g 
          augaa   ggacaa  GAGAUUGAUU  CA UGGUA   uugca  
          |||||   ||||||  ||||||||||  || |||||   ||||| u
          ugcuu   cuuguu  CUCUAGCUAG  GU ACCAU   gaugu  
auucccauuu     gug      AC          UU  -     --U     a 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold14: 541732-541836 [-]

Mature bma-miR-5866-5p

• Accession: MIMAT0057230
• Description: Brugia malayi bma-miR-5866-5p mature miRNA
• Sequence: 24 - GAGAUUGAUUUUCACUGGUACCU - 46
• Evidence: experimental ; Illumina [2]

Mature bma-miR-5866-3p

• Accession: MIMAT0026365
• Description: Brugia malayi bma-miR-5866-3p mature miRNA
• Sequence: 60 - UUACCAUGUUGAUCGAUCUCCA - 81
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498