Stem-loop bma-mir-5868

Accession

MI0023470

Description

Brugia malayi bma-mir-5868 precursor miRNA

Sequence

aaaaccaguaccgauuuagcauuguauauuuguggaauuauuuuuguaauuugauucaAAUUGAUUCUGCUAAUAUGCAGUuauauuuuggugcaaaugaaau
.......(((((((..((..((((((((((.(((((((((..((((..........)))).))))))))).))))))))))..))..))))))).........

Structure

--aaaacca       uu  gc          u         uu    uaau 
         guaccga  ua  auuguauauu guggaauua  uuug    u
         |||||||  ||  |||||||||| |||||||||  ||||     
         cgugguu  au  UGACGUAUAA CGUCUUAGU  AAac    u
uaaaguaaa       uu  au          U         -U    uuag 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold3: 1273443-1273545 [-]

Mature bma-miR-5868

• Accession: MIMAT0026367
• Description: Brugia malayi bma-miR-5868 mature miRNA
• Sequence: 59 - AAUUGAUUCUGCUAAUAUGCAGU - 81
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498