Stem-loop bma-mir-5871

Accession

MI0023473

Description

Brugia malayi bma-mir-5871 precursor miRNA

Sequence

auuggguuaagaggaugugguuUAUAGGAGGUCUCAAAAUGAAUgaguuucaaauuugucauccauuuugagaaauuccuauaaaccacauccuuuucuuccauucu
..((((..((((((((((((((((((((((.((((((((((.((((............)))).))))))))))..))))))))))))))))))))))..))))....

Structure

--au    uu                      -G          A    guuuc 
    uggg  aagaggaugugguuUAUAGGAG  UCUCAAAAUG AUga     a
    ||||  ||||||||||||||||||||||  |||||||||| ||||      
    accu  uuuuccuacaccaaauauccuu  agaguuuuac uacu     a
ucuu    uc                      aa          c    guuua 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold1: 875980-876086 [-]

Mature bma-miR-5871

• Accession: MIMAT0026370
• Description: Brugia malayi bma-miR-5871 mature miRNA
• Sequence: 23 - UAUAGGAGGUCUCAAAAUGAAU - 44
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498