Stem-loop bma-mir-5875

Accession

MI0023484

Description

Brugia malayi bma-mir-5875 precursor miRNA

Sequence

uuugucuuuuAGUGCAAGUAUGACAGUUUGCAUGcauaugcauaugcaugcaaacugucaucaagcaugcauuacaug
.........(((((((.(((((((((((((((((((((....)))))))))))))))))))...)).)))))))....

Structure

uuugucuuu       A  ---                   u 
         uAGUGCA GU   AUGACAGUUUGCAUGcaua g
         ||||||| ||   |||||||||||||||||||  
         auuacgu cg   uacugucaaacguacguau c
-----guac       a  aac                   a 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold69: 172889-172966 [+]

Mature bma-miR-5875

• Accession: MIMAT0026374
• Description: Brugia malayi bma-miR-5875 mature miRNA
• Sequence: 11 - AGUGCAAGUAUGACAGUUUGCAUG - 34
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4