Stem-loop bma-mir-5876

Accession

MI0023485

Description

Brugia malayi bma-mir-5876 precursor miRNA

Sequence

uuucucuuuccccuccucucuucauccuagacuuggauauuauagaaaagCUAGGAGGAAAUGAGGGGUAAGAUgagaaguguc
((((((((.((((((...(((...((((((.(((.............))))))))))))...)))))).)))).))))......

Structure

------    -    u      cuc   uca      a   ggaua 
      uuuc ucuu ccccuc   ucu   uccuag cuu     u
      |||| |||| ||||||   |||   |||||| |||     u
      agag AGAA GGGGAG   AGG   AGGAUC gaa     a
cuguga    U    U      UAA   ---      -   aagau 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold65: 28487-28570 [+]

Mature bma-miR-5876

• Accession: MIMAT0026375
• Description: Brugia malayi bma-miR-5876 mature miRNA
• Sequence: 51 - CUAGGAGGAAAUGAGGGGUAAGAU - 74
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498