Stem-loop bma-mir-5877

Accession

MI0023486

Description

Brugia malayi bma-mir-5877 precursor miRNA

Sequence

ugagugagugagaaacaagggaAUCGUAUCCUCAAGUAAGUCUCGAaaaucuauucgagacuuacuugaggauacgugaggaucuuaguugagcaguau
......(.((...(((((((....(((((((((((((((((((((((......)))))))))))))))))))))))......)))).)))...)).)..

Structure

ugagug g  aga   -    --gaAU                       aa 
      a ug   aac aagg      CGUAUCCUCAAGUAAGUCUCGAa  u
      | ||   ||| ||||      |||||||||||||||||||||||   
      u ac   uug uucu      gcauaggaguucauucagagcuu  c
----ua g  gag   a    aggagu                       au 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold48: 150278-150376 [+]

Mature bma-miR-5877

• Accession: MIMAT0026376
• Description: Brugia malayi bma-miR-5877 mature miRNA
• Sequence: 23 - AUCGUAUCCUCAAGUAAGUCUCGA - 46
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4