miRBase entry: bma-mir-5877

Stem-loop bma-mir-5877


Accession
MI0023486
Description
Brugia malayi bma-mir-5877 precursor miRNA


Sequence


ugagugagugagaaacaagggaAUCGUAUCCUCAAGUAAGUCUCGAaaaucuauucgagacuuacuugaggauacgugaggaucuuaguugagcaguau
......(.((...(((((((....(((((((((((((((((((((((......)))))))))))))))))))))))......)))).)))...)).)..

Structure
ugagug g  aga   -    --gaAU                       aa 
      a ug   aac aagg      CGUAUCCUCAAGUAAGUCUCGAa  u
      | ||   ||| ||||      |||||||||||||||||||||||   
      u ac   uug uucu      gcauaggaguucauucagagcuu  c
----ua g  gag   a    aggagu                       au 


Annotation confidence Low
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold48: 150278-150376 [+]

Database links

Mature bma-miR-5877

Accession MIMAT0026376
Description Brugia malayi bma-miR-5877 mature miRNA
Sequence 23 - AUCGUAUCCUCAAGUAAGUCUCGA - 46
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4