Stem-loop bma-mir-5878

Accession

MI0023488

Description

Brugia malayi bma-mir-5878 precursor miRNA

Sequence

ucacaaacgauaagugugagucucuugguaauucauucauauuaauuuaaucaguuuauUUAUAUGAAUGAAGUACCGAGAgauucguacguauuguuugucaguc
..((((((((((.(((((((((((((((((.(((((((((((.(((...........))).))))))))))).))))))))))))))))).)))))))))).....

Structure

---uc          a                 a           u   uuaa 
     acaaacgaua gugugagucucuuggua uucauucauau aau    u
     |||||||||| ||||||||||||||||| ||||||||||| |||    c
     uguuuguuau caugcuuagAGAGCCAU AAGUAAGUAUA Uua    a
cugac          g                 G           U   uuug 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold3: 807959-808064 [+]

Mature bma-miR-5878

• Accession: MIMAT0026377
• Description: Brugia malayi bma-miR-5878 mature miRNA
• Sequence: 60 - UUAUAUGAAUGAAGUACCGAGA - 81
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498