Stem-loop bma-mir-5879a

Accession

MI0023489

Description

Brugia malayi bma-mir-5879a precursor miRNA

Sequence

19487 reads, 558.0 reads per million, 26 experiments

gugaaucagucuaGCAGAAAAGACUCAACUAUGCGuagauauagaugcACAUAGUUGAGUCUUUCCUGCUAgguuguuuua
.((((.(((((((((((.(((((((((((((((.(((........))).))))))))))))))).))))))))))).))))

Structure

g    u           A               C   gau 
 ugaa cagucuaGCAG AAAGACUCAACUAUG Gua   a
 |||| ||||||||||| ||||||||||||||| |||    
 auuu guuggAUCGUC UUUCUGAGUUGAUAC cgu   u
-    u           C               A   aga 

Annotation confidence Medium

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold158: 22877-22957 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5879a

Mature bma-miR-5879a-5p

• Accession: MIMAT0057233
• Description: Brugia malayi bma-miR-5879a-5p mature miRNA
• Sequence: 14 - GCAGAAAAGACUCAACUAUGCG - 35
• Evidence: experimental ; Illumina [2]

Mature bma-miR-5879a-3p

• Accession: MIMAT0026378
• Description: Brugia malayi bma-miR-5879a-3p mature miRNA
• Sequence: 49 - ACAUAGUUGAGUCUUUCCUGCUA - 71
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498