Stem-loop bma-mir-5879b

Accession

MI0023490

Description

Brugia malayi bma-mir-5879b precursor miRNA

Sequence

13769 reads, 299.0 reads per million, 24 experiments

aaacaaccuaGCAGGAAAGACUCAACUAUGUgcaucuauaucuaCGCAUAGUUGAGUCUUUUCUGCuagacugauu
.......(((((((((((((((((((((((((............))))))))))))))))))))))))).......

Structure

aaacaac                         caucu 
       cuaGCAGGAAAGACUCAACUAUGUg     a
       |||||||||||||||||||||||||      
       gauCGUCUUUUCUGAGUUGAUACGC     u
uuaguca                         aucua 

Annotation confidence Medium

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold158: 22879-22954 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5879b

Mature bma-miR-5879b-5p

• Accession: MIMAT0026379
• Description: Brugia malayi bma-miR-5879b-5p mature miRNA
• Sequence: 11 - GCAGGAAAGACUCAACUAUGU - 31
• Evidence: not_experimental

Mature bma-miR-5879b-3p

• Accession: MIMAT0057234
• Description: Brugia malayi bma-miR-5879b-3p mature miRNA
• Sequence: 45 - CGCAUAGUUGAGUCUUUUCUGC - 66
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4