miRBase entry: bma-mir-5879b

Stem-loop bma-mir-5879b


Accession
MI0023490
Description
Brugia malayi bma-mir-5879b precursor miRNA


Sequence

aaacaaccuaGCAGGAAAGACUCAACUAUGUgcaucuauaucuacgcauaguugagucuuuucugcuagacugauu
.......(((((((((((((((((((((((((............))))))))))))))))))))))))).......

Structure
aaacaac                         caucu 
       cuaGCAGGAAAGACUCAACUAUGUg     a
       |||||||||||||||||||||||||      
       gaucgucuuuucugaguugauacgc     u
uuaguca                         aucua 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold158: 22879-22954 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-5879b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-5879b

Accession MIMAT0026379
Description Brugia malayi bma-miR-5879b mature miRNA
Sequence 11 - GCAGGAAAGACUCAACUAUGU - 31
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4