miRBase entry: bma-mir-5880b

Stem-loop bma-mir-5880b

Accession

MI0023492

Description

Brugia malayi bma-mir-5880b precursor miRNA

Sequence

uguccaaguuugaccuaacaaguuaccgauguaacaguuuuugcacacGUCGGUAAUUUGUUAGAUCAAACuuggacaucu
(((((((((((((.((((((((((((((((((....((....))..)))))))))))))))))).)))))))))))))...

Structure

---             c                  aaca  u 
   uguccaaguuuga cuaacaaguuaccgaugu    gu u
   ||||||||||||| ||||||||||||||||||    ||  
   acagguuCAAACU GAUUGUUUAAUGGCUGca    cg u
ucu             A                  --ca  u

Annotation confidence Not enough data

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Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold24: 278000-278080 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5880b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-miR-5880b

Accession	MIMAT0026381
Description	Brugia malayi bma-miR-5880b mature miRNA
Sequence	49 - GUCGGUAAUUUGUUAGAUCAAAC - 71
Evidence	not_experimental

References

PubMed ID: 22216965
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
BMC Genomics (2012) 13:4