Stem-loop bma-mir-5880b

Accession

MI0023492

Description

Brugia malayi bma-mir-5880b precursor miRNA

Sequence

uguccaaguuugaccuaacaaguuaccgauguaacaguuuuugcacacGUCGGUAAUUUGUUAGAUCAAACuuggacaucu
(((((((((((((.((((((((((((((((((....((....))..)))))))))))))))))).)))))))))))))...

Structure

---             c                  aaca  u 
   uguccaaguuuga cuaacaaguuaccgaugu    gu u
   ||||||||||||| ||||||||||||||||||    ||  
   acagguuCAAACU GAUUGUUUAAUGGCUGca    cg u
ucu             A                  --ca  u 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold24: 278000-278080 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5880b

Mature bma-miR-5880b

• Accession: MIMAT0026381
• Description: Brugia malayi bma-miR-5880b mature miRNA
• Sequence: 49 - GUCGGUAAUUUGUUAGAUCAAAC - 71
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4