Stem-loop bma-mir-5881a

Accession

MI0023493

Description

Brugia malayi bma-mir-5881a precursor miRNA

Sequence

179 reads, 17.0 reads per million, 10 experiments

aguaacuuaaAAUCGGACAACUACGACACUAAgggcgcaaaagucgcccUUAGUGUCGUAGUUGUCCuaauuucaauccu
..............((((((((((((((((((((((((....).))))))))))))))))))))))).............

Structure

aguaacuuaaAAUC                       - a 
              GGACAACUACGACACUAAgggcg c a
              ||||||||||||||||||||||| |  
              CCUGUUGAUGCUGUGAUUcccgc g a
-uccuaacuuuaau                       u a 

Annotation confidence Medium

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold4: 1450466-1450545 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5881a

Mature bma-miR-5881a-5p

• Accession: MIMAT0026382
• Description: Brugia malayi bma-miR-5881a-5p mature miRNA
• Sequence: 11 - AAUCGGACAACUACGACACUAA - 32
• Evidence: not_experimental

Mature bma-miR-5881a-3p

• Accession: MIMAT0057235
• Description: Brugia malayi bma-miR-5881a-3p mature miRNA
• Sequence: 50 - UUAGUGUCGUAGUUGUCC - 67
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4