Stem-loop bma-mir-5881b

Accession

MI0023494

Description

Brugia malayi bma-mir-5881b precursor miRNA

Sequence

cuugcagaguuuaggauugaaauuAGGACAACUACGACACUAAGGGcgacuuuugcgcccuuagugucguaguuguccgauuuuaaguuacuuccauauuuua
......((((......((((((((.(((((((((((((((((((((((.(....))))))))))))))))))))))))))))))))...))))..........

Structure

----cuugca    uuagga        A                       a u 
          gagu      uugaaauu GGACAACUACGACACUAAGGGcg c u
          ||||      |||||||| ||||||||||||||||||||||| |  
          uuca      aauuuuag ccuguugaugcugugauucccgc g u
auuuuauacc    ---uug        -                       - u 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold4: 1450454-1450556 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5881b

Mature bma-miR-5881b

• Accession: MIMAT0026383
• Description: Brugia malayi bma-miR-5881b mature miRNA
• Sequence: 25 - AGGACAACUACGACACUAAGGG - 46
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498