miRBase entry: bma-mir-5881b

Stem-loop bma-mir-5881b

Accession

MI0023494

Description

Brugia malayi bma-mir-5881b precursor miRNA

Sequence

cuugcagaguuuaggauugaaauuAGGACAACUACGACACUAAGGGcgacuuuugcgcccuuagugucguaguuguccgauuuuaaguuacuuccauauuuua
......((((......((((((((.(((((((((((((((((((((((.(....))))))))))))))))))))))))))))))))...))))..........

Structure

----cuugca    uuagga        A                       a u 
          gagu      uugaaauu GGACAACUACGACACUAAGGGcg c u
          ||||      |||||||| ||||||||||||||||||||||| |  
          uuca      aauuuuag ccuguugaugcugugauucccgc g u
auuuuauacc    ---uug        -                       - u

Annotation confidence Not enough data

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Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold4: 1450454-1450556 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5881b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-miR-5881b

Accession	MIMAT0026383
Description	Brugia malayi bma-miR-5881b mature miRNA
Sequence	25 - AGGACAACUACGACACUAAGGG - 46
Evidence	experimental Illumina [2]

References

PubMed ID: 22216965
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
BMC Genomics (2012) 13:4

PubMed ID: 24824352
Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
PLoS One (2014) 9:e96498