Stem-loop bma-mir-5883-1

Accession

MI0023502

Description

Brugia malayi bma-mir-5883-1 precursor miRNA

Sequence

ccucacgcagaauuuauucgacucgguccccuccauaucgcgucccucgcucauuucauguaugucucggUGGAAUGGUGUGAGUAGUGUGguaugucgau
.................(((((..((......))((((((((...((((((((((((((..........))))))))).)))))...))))))))))))).

Structure

ccucacgcagaauuuau     ucgguccccucc        ucc     -         guau 
                 ucgac            auaucgcg   cucgc ucauuucau    g
                 |||||            ||||||||   ||||| |||||||||     
                 agcug            uaugGUGU   GAGUG GGUAAGGUg    u
----------------u     ------------        GAU     U         gcuc 

Annotation confidence Low

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold1706: 2431-2531 [-]

Mature bma-miR-5883

• Accession: MIMAT0026387
• Description: Brugia malayi bma-miR-5883 mature miRNA
• Sequence: 71 - UGGAAUGGUGUGAGUAGUGUG - 91
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4