Stem-loop sbi-MIR6218

Accession

MI0023510

Description

Sorghum bicolor sbi-MIR6218 precursor miRNA

Sequence

guauuuauaaauuauaaaaaauccaaacgacgucCGAAAAUCACGAAACUUGUCGaugugucuugguaucccauguggagacuaugauaaaaauuuuaggaaguuucgagcaaguagugauguccgauacuuaaaacccagacaucuccacuugucaaaguuuugugaucacauguggaggaggauggcuuuuaagcauucgaagucacuacaugaaacuuccucaaauuuuuaucauagucuccacaugggauaccaagacacaucgACAAGUUUCGUGAUUUUUGGAcgucguucggauuuuuuauaauuuaaauac
(((((((..(((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((.....((((((((.((.(((.(((((((.(((..(.(((((((.((((((....))).....))).))))))).)..))).))))))).))).)).)))))))).))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))

Structure

       ua               a                                                                       u           agcaa        g  c   a       c   ga a       u   -----   a 
guauuua  aauuauaaaaaaucc aacgacgucCGAAAAUCACGAAACUUGUCGaugugucuugguaucccauguggagacuaugauaaaaauuu aggaaguuucg     guagugau uc gau cuuaaaa cca  c ucuccac ugu     caa g
|||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     |||||||| || ||| ||||||| |||  | ||||||| |||     |||  
cauaaau  uuaauauuuuuuagg uugcugcAGGUUUUUAGUGCUUUGAACAgcuacacagaaccauaggguacaccucugauacuauuuuuaaa uccuucaaagu     caucacug ag uua gaauuuu ggu  g ggaggug aca     guu u
       --               c                                                                       c           ----a        a  c   c       c   ag a       u   cuagu   u 

Annotation confidence Not enough data

Genome context

chr10: 6542524-6542842 [+]

Mature sbi-miR6218-5p

• Accession: MIMAT0026396
• Description: Sorghum bicolor sbi-miR6218-5p mature miRNA
• Sequence: 35 - CGAAAAUCACGAAACUUGUCG - 55
• Evidence: not_experimental

Mature sbi-miR6218-3p

• Accession: MIMAT0026397
• Description: Sorghum bicolor sbi-miR6218-3p mature miRNA
• Sequence: 269 - ACAAGUUUCGUGAUUUUUGGA - 289
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290