miRBase entry: sbi-MIR6223

Stem-loop sbi-MIR6223


Accession
MI0023519
Description
Sorghum bicolor sbi-MIR6223 precursor miRNA


Sequence

gaagagcuauucuuugUUCUUGGGAGGAGCAUGCUAGaaauuuucucaaagucaguccuugacuuucagaaaguucCUAGCAUGUUCCUCCUAAGAGcaugcucucuc
..(((((.......(((((((((((((((((((((((.((((((((.(((((((.....))))))).)))))))).))))))))))))))))))))))).)))))...

Structure
-ga     uauucuu                       a        c       g 
   agagc       ugUUCUUGGGAGGAGCAUGCUAG aauuuucu aaaguca u
   |||||       ||||||||||||||||||||||| |||||||| ||||||| c
   ucucg       acGAGAAUCCUCCUUGUACGAUC uugaaaga uuucagu c
cuc     ------u                       c        c       u 


Annotation confidence Not enough data
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Genome context
chr7: 8175118-8175225 [+]

Database links

Mature sbi-miR6223-5p

Accession MIMAT0026412
Description Sorghum bicolor sbi-miR6223-5p mature miRNA
Sequence 17 - UUCUUGGGAGGAGCAUGCUAG - 37
Evidence not_experimental

Mature sbi-miR6223-3p

Accession MIMAT0026413
Description Sorghum bicolor sbi-miR6223-3p mature miRNA
Sequence 77 - CUAGCAUGUUCCUCCUAAGAG - 97
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290