miRBase entry: sbi-MIR6224a

Stem-loop sbi-MIR6224a


Accession
MI0023520
Description
Sorghum bicolor sbi-MIR6224a precursor miRNA


Sequence

2667 reads, 69.0 reads per million, 49 experiments
acucccuccguccuaauauauaaggcguaaccacuuuuuaaucauguccuauaauacaaagcgugcccucucacAGACAUUAAUGCAGUAGUACUAGUgcugagagagaaaauuaaaugcguucuuggucuuugaaccagaggugguuaugcCUUAUAUACUAGGACGGAGGGAGU
(((((((((((((((.((((((((((((((((((((((...(((.(.((...(((.((.........(((((.(((.(((((.(((....))).)))))))).))))).........)).)))...)).)..)))...)))))))))))))))))))))).)))))))))))))))

Structure
               a                      uaa   -u u  uau   a  aagcgugcc     a   A     A   A 
acucccuccguccua uauauaaggcguaaccacuuuu   uca  g cc   aau ca         cucuc cAG CAUUA UGC G
||||||||||||||| ||||||||||||||||||||||   |||  | ||   ||| ||         ||||| ||| ||||| |||  
UGAGGGAGGCAGGAU AUAUAUUCcguauugguggaga   agu  c gg   uug gu         gagag guc gUGAU AUG U
               C                      cca   uu u  uuc   c  aaauuaaaa     a   -     C   A 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr1: 30488899-30489074 [-]

Database links

Mature sbi-miR6224a-5p

Accession MIMAT0026414
Description Sorghum bicolor sbi-miR6224a-5p mature miRNA
Sequence 75 - AGACAUUAAUGCAGUAGUACUAGU - 98
Evidence not_experimental

Mature sbi-miR6224a-3p

Accession MIMAT0026415
Description Sorghum bicolor sbi-miR6224a-3p mature miRNA
Sequence 153 - CUUAUAUACUAGGACGGAGGGAGU - 176
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290