Stem-loop sbi-MIR6224c

Accession

MI0023522

Description

Sorghum bicolor sbi-MIR6224c precursor miRNA

Sequence

ucauuuuugucuuguaguagacauacuccCUCCGUCCUAAUAUAUAAGGCguaaccacuuuuuguucauaucucauaauauaaggcgugcucucucacaaacauuaauguagcacuauuagugcugagagggagagaauuaaauacguucuuggucuuugaaucaaaggguacgcCUUAUAUACUAGGACGGAGGGaguauaugcuaaagaugagcuauga
((((.((((((((.(((((...(((((((((((((((((.(((((((((((((.((.((((..(((((.............(((((...((((((((....((((((((......)))))))).)))))))).((((((.......)))))).)))))))))).))))))))))))))))))).))))))))))))))))).)))))))))))))..))))

Structure

    -u        g     gac                 A             a  a    uu     uaucucauaauau     ------------------gug        caaa        ua 
ucau  uuugucuu uagua   auacuccCUCCGUCCUA UAUAUAAGGCgua cc cuuu  guuca             aaggc                     cucucuca    cauuaaug  g
||||  |||||||| |||||   ||||||||||||||||| ||||||||||||| || ||||  |||||             |||||                     ||||||||    ||||||||   
agua  gaguagaa aucgu   uaugaGGGAGGCAGGAU AUAUAUUCcgcau gg gaaa  uaagu             uucug                     gggagagu    gugauuau  c
    uc        -     --a                 C             -  -    -c     -------------     guucuugcauaaauuaagaga        ---c        ca 

Annotation confidence Not enough data

Genome context

chr4: 7056702-7056922 [-]

Mature sbi-miR6224c-5p

• Accession: MIMAT0026418
• Description: Sorghum bicolor sbi-miR6224c-5p mature miRNA
• Sequence: 30 - CUCCGUCCUAAUAUAUAAGGC - 50
• Evidence: not_experimental

Mature sbi-miR6224c-3p

• Accession: MIMAT0026419
• Description: Sorghum bicolor sbi-miR6224c-3p mature miRNA
• Sequence: 176 - CUUAUAUACUAGGACGGAGGG - 196
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290