Stem-loop sbi-MIR6225

Accession

MI0023523

Description

Sorghum bicolor sbi-MIR6225 precursor miRNA

Literature search

1 open access papers mention sbi-MIR6225
(3 sentences)

Sequence

49213 reads, 1961.0 reads per million, 50 experiments

uaaucauguACUAACUAGACUCAAAAGAUUCaucucccgauuuauagauaaauugugcaauuaguuuuuguuuuugucuauauuuaaugcuucacgcaugugcuguaaaauucgauaugaagggaaaucuugaaaaguuuuugguacuuuuugaaaacuacccaaaacuuuucaagauuucccaucauaaugaAUCUUACGGCACAUGCAUuaaacacuaaauauagaugaaaauaaaaacuaauuauauaauuugucuguaauuugcgaaacgaaucuuuuaagucuaauuaaauuauuauua
...........(((.((((((.(((((((((...((.(((.((((((((((((((((.((((((((((((((((((((((((((((.((......(((((((((((((.(((((.(((((.((((((((((((((((((((.((((.(((....))).)))).)))))))))))))))))))).))))).))))).)))))))))))))......)).)))))))))))))))))))))))))))).)))))))))))))))).))).))...))))))))).)))))).)))...........

Structure

uaaucauguAC   C      C         auc  c   u                c                            a  cuucac             a     a     a                    u    c   u 
           UAA UAGACU AAAAGAUUC   uc cga uuauagauaaauugug aauuaguuuuuguuuuugucuauauuua ug      gcaugugcuguaa auucg uauga gggaaaucuugaaaaguuuu ggua uuu u
           ||| |||||| |||||||||   || ||| |||||||||||||||| |||||||||||||||||||||||||||| ||      ||||||||||||| ||||| ||||| |||||||||||||||||||| |||| |||  
           auu aucuga uuuucuaag   ag guu aaugucuguuuaauau uuaaucaaaaauaaaaguagauauaaau ac      CGUACACGGCAUU UAagu auacu cccuuuagaacuuuucaaaa ccau aaa g
auuauuauuaa   a      a         caa  c   u                a                            c  aaauUA             C     a     a                    c    c   a 

Annotation confidence Low

Genome context

chr3: 10003904-10004207 [-]

Mature sbi-miR6225-5p

• Accession: MIMAT0026420
• Description: Sorghum bicolor sbi-miR6225-5p mature miRNA
• Sequence: 10 - ACUAACUAGACUCAAAAGAUUC - 31
• Evidence: not_experimental

Mature sbi-miR6225-3p

• Accession: MIMAT0026421
• Description: Sorghum bicolor sbi-miR6225-3p mature miRNA
• Sequence: 194 - AUCUUACGGCACAUGCAU - 211
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290