Stem-loop sbi-MIR6225

Accession

MI0023523

Description

Sorghum bicolor sbi-MIR6225 precursor miRNA

Literature search

1 open access papers mention sbi-MIR6225
(2 sentences)

Sequence

uaaucauguacuAACUAGACUCAAAAGAUUCAUCUCccgauuuauagauaaauugugcaauuaguuuuuguuuuugucuauauuuaaugcuucacgcaugugcuguaaaauucgauaugaagggaaaucuugaaaaguuuuugguacuuuuugaaaacuacccaaaacuuuucaagauuucccaucauaaugaaucuuacggcacaugcauuaaacacuaaauauagaugaaaauaaaaacuaauuauauaauuugucuguaauuugcGAAACGAAUCUUUUAAGUCUAAUUaaauuauuauua
...........(((.((((((.(((((((((...((.(((.((((((((((((((((.((((((((((((((((((((((((((((.((......(((((((((((((.(((((.(((((.((((((((((((((((((((.((((.(((....))).)))).)))))))))))))))))))).))))).))))).)))))))))))))......)).)))))))))))))))))))))))))))).)))))))))))))))).))).))...))))))))).)))))).)))...........

Structure

uaaucauguac   C      C         AUC  c   u                c                            a  cuucac             a     a     a                    u    c   u 
           uAA UAGACU AAAAGAUUC   UC cga uuauagauaaauugug aauuaguuuuuguuuuugucuauauuua ug      gcaugugcuguaa auucg uauga gggaaaucuugaaaaguuuu ggua uuu u
           ||| |||||| |||||||||   || ||| |||||||||||||||| |||||||||||||||||||||||||||| ||      ||||||||||||| ||||| ||||| |||||||||||||||||||| |||| |||  
           aUU AUCUGA UUUUCUAAG   AG guu aaugucuguuuaauau uuaaucaaaaauaaaaguagauauaaau ac      cguacacggcauu uaagu auacu cccuuuagaacuuuucaaaa ccau aaa g
auuauuauuaa   A      A         CAA  c   u                a                            c  aaauua             c     a     a                    c    c   a 

Annotation confidence Not enough data

Genome context

chr3: 10003904-10004207 [-]

Mature sbi-miR6225-5p

• Accession: MIMAT0026420
• Description: Sorghum bicolor sbi-miR6225-5p mature miRNA
• Sequence: 13 - AACUAGACUCAAAAGAUUCAUCUC - 36
• Evidence: not_experimental

Mature sbi-miR6225-3p

• Accession: MIMAT0026421
• Description: Sorghum bicolor sbi-miR6225-3p mature miRNA
• Sequence: 269 - GAAACGAAUCUUUUAAGUCUAAUU - 292
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290