Stem-loop sbi-MIR5568d

Accession

MI0023524

Description

Sorghum bicolor sbi-MIR5568d precursor miRNA

Literature search

2 open access papers mention sbi-MIR5568d
(4 sentences)

Sequence

4211 reads, 171.0 reads per million, 48 experiments

cacccucugucccaaauuguaggucguuuuggcuUUUCUAGAUACAUAGCUUUUGcuaugcacuuagauauaugauacaucuagauacauaauaaaaguugugUAUCUAGAAAAGCCAAAAcgaccuguaaaauugaacggagggug
((((((((((..(((.(((((((((((((((((((((((((((((((((((((((.((((...((((((.........))))))...)))).)))))))))))))))))))))))))))))))))))))))..))).))))))))))

Structure

          cc   -a                                       c    cac      aua 
cacccucugu  caa  uuguaggucguuuuggcuUUUCUAGAUACAUAGCUUUUG uaug   uuagau   u
||||||||||  |||  ||||||||||||||||||||||||||||||||||||||| ||||   ||||||   g
gugggaggca  guu  aauguccagcAAAACCGAAAAGAUCUAUguguugaaaau auac   gaucua   a
          -a   aa                                       a    aua      cau 

Annotation confidence Low

Genome context

chr3: 65618892-65619038 [+]

Mature sbi-miR5568d-5p

• Accession: MIMAT0026422
• Description: Sorghum bicolor sbi-miR5568d-5p mature miRNA
• Sequence: 35 - UUUCUAGAUACAUAGCUUUUG - 55
• Evidence: not_experimental

Mature sbi-miR5568d-3p

• Accession: MIMAT0026423
• Description: Sorghum bicolor sbi-miR5568d-3p mature miRNA
• Sequence: 104 - UAUCUAGAAAAGCCAAAA - 121
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290