miRBase entry: sbi-MIR6226

Stem-loop sbi-MIR6226


Accession
MI0023525
Description
Sorghum bicolor sbi-MIR6226 precursor miRNA


Sequence

3625 reads, 55.0 reads per million, 49 experiments
uccuuagccacccauauuuucagaucggACGACUAAUCGCGAUUAAuugugauuagucauccuuaucguaacugcgugcuugauauguuucgucgauucgaucaggucgaucagaaaccuuaucguccgauuagucacgauuagucguCCGAUAAGUGUAGCAGGA
((((..(((((............((((((((((((((((.(((((((((.(((.............(((....))).....((((.((((((((((((......)))))))..)))))..)))))))))))))))).))))))))))))))))..)))..))))))

Structure
    ua  --   ccauauuuucag                C         u   uagucauccuuaucguaacugcgugcuu    -u     --       cg 
uccu  gc  cac            aucggACGACUAAUCG GAUUAAuug gau                            gaua  guuuc  gucgauu  a
||||  ||  |||            |||||||||||||||| ||||||||| |||                            ||||  |||||  |||||||   
AGGA  CG  GUG            UAGCCugcugauuagc cugauuagc cug                            cuau  caaag  uagcugg  u
    --  AU   ----------AA                a         -   ----------------------------    uc     ac       ac 


Annotation confidence Low
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Genome context
chr10: 40284608-40284773 [+]

Database links

Mature sbi-miR6226-5p

Accession MIMAT0026424
Description Sorghum bicolor sbi-miR6226-5p mature miRNA
Sequence 29 - ACGACUAAUCGCGAUUAA - 46
Evidence not_experimental

Mature sbi-miR6226-3p

Accession MIMAT0026425
Description Sorghum bicolor sbi-miR6226-3p mature miRNA
Sequence 149 - CCGAUAAGUGUAGCAGGA - 166
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290