Stem-loop sbi-MIR2118

Accession

MI0023526

Description

Sorghum bicolor sbi-MIR2118 precursor miRNA

Literature search

2 open access papers mention sbi-MIR2118
(3 sentences)

Sequence

gugggcauggaagaggaagaaaagagggucuaagagcagugGGCAUGGGAACAUGUAGGAAGGccuuugagauggaaagcucauuuugggucUUCCUGAUGCCUCCCAUGCCUAuuguucuuaggugcuccuuccucuugcuuuuggcucac
((((((..(.(((((((((....(((.(((((((((((((((((((((((.(((.(((((((((((..(((((((.....)))))))))))))))))))))..))))))))))))))))))))))).)))))))))))).).....))))))

Structure

      ---au g         aaaa   g                       -A   G           uu       a 
gugggc     g aagaggaag    gag gucuaagagcagugGGCAUGGGA  CAU UAGGAAGGccu  gagaugg a
||||||     | |||||||||    ||| |||||||||||||||||||||||  ||| |||||||||||  ||||||| a
cacucg     c uucuccuuc    cuc uggauucuuguuAUCCGUACCCU  GUA GUCCUUcuggg  uuuuacu g
      guuuu g         ----   g                       CC   -           --       c 

Annotation confidence Not enough data

Genome context

chr6: 45483175-45483326 [-]

Mature sbi-miR2118-5p

• Accession: MIMAT0026426
• Description: Sorghum bicolor sbi-miR2118-5p mature miRNA
• Sequence: 42 - GGCAUGGGAACAUGUAGGAAGG - 63
• Evidence: not_experimental

Mature sbi-miR2118-3p

• Accession: MIMAT0026427
• Description: Sorghum bicolor sbi-miR2118-3p mature miRNA
• Sequence: 93 - UUCCUGAUGCCUCCCAUGCCUA - 114
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290