miRBase entry: sbi-MIR6227

Stem-loop sbi-MIR6227


Accession
MI0023527
Description
Sorghum bicolor sbi-MIR6227 precursor miRNA


Sequence

13240 reads, 534.0 reads per million, 50 experiments
cuggacauggauguauagguaguagugggcccaaauagcaaguguugugagaaggaguaaaaaagagaagauauuuuagagacaaguaugaaacaacuuauugaauaacuuggcuuuuaucacgugacuuauagccAAGCACUUGGCUCUAUUAgagcaagaucaauaauagagccaaguguuuggcuauaaguuaagugauuagagccaaguuauacaauaaguugucucauacuugucucuaaaauaucuucuauuucuuauuccuuCUCACAACACUUGCUAUUUGGgcccacuacuacuuauggauccgugcucag
((((.(((((((.(((((((((((((((((((((((((((((((((((((((((((((((.(((.((((((((((((((((((((((((((.(((((((((((.(((((((((((((.(((((.((((((((((((((((((((((((((((((((......))..)))))))))))))))))))))))))))))).))))).))))))))))))).))))))))))).)))))))))))))))))))))))))).))).))))))))))))))))))))))))))))))))))))))))))))))).))))))).))))

Structure
    a       g                                               a   g                          a           a             u     g                              --  gc 
cugg cauggau uauagguaguagugggcccaaauagcaaguguugugagaaggaguaa aaa agaagauauuuuagagacaaguauga acaacuuauug auaacuuggcuuu aucac ugacuuauagccAAGCACUUGGCUCUAUUA  ga  a
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||  ||   
gacu gugccua guauucaucaucacccgGGUUUAUCGUUCACAACACUCuuccuuauu uuu ucuucuauaaaaucucuguucauacu uguugaauaac uauugaaccgaga uagug auugaauaucgguuugugaaccgagauaau  cu  a
    c       g                                               c   a                          c           a             u     a                              aa  ag 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature sbi-miR6227-5p

Accession MIMAT0026428
Description Sorghum bicolor sbi-miR6227-5p mature miRNA
Sequence 137 - AAGCACUUGGCUCUAUUA - 154
Evidence not_experimental

Mature sbi-miR6227-3p

Accession MIMAT0026429
Description Sorghum bicolor sbi-miR6227-3p mature miRNA
Sequence 270 - CUCACAACACUUGCUAUUUGG - 290
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290