miRBase entry: sbi-MIR6228

Stem-loop sbi-MIR6228


Accession
MI0023529
Description
Sorghum bicolor sbi-MIR6228 precursor miRNA


Sequence

1506 reads, 52.0 reads per million, 49 experiments
gcagUUUCUAUCUCUAUUAAUUguguugccaacucaccauuuugcugcuGUGGCAGUAGAAUUAAUGAAGGGAgagagugc
(((.(((((.(((.((((((((.((((((((...((.((...)).))...)))))))).)))))))).))).))))).)))

Structure
   g     A   C        g        acu  c  u 
gca UUUCU UCU UAUUAAUU uguugcca   ca ca  
||| ||||| ||| |||||||| ||||||||   || || u
cgu agagA GGA GUAAUUAA AUGACGGU   gu gu  
   g     G   A        G        Guc  c  u 


Annotation confidence Low
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Genome context
chr2: 64495066-64495146 [-]

Database links

Mature sbi-miR6228-5p

Accession MIMAT0026432
Description Sorghum bicolor sbi-miR6228-5p mature miRNA
Sequence 5 - UUUCUAUCUCUAUUAAUU - 22
Evidence not_experimental

Mature sbi-miR6228-3p

Accession MIMAT0026433
Description Sorghum bicolor sbi-miR6228-3p mature miRNA
Sequence 50 - GUGGCAGUAGAAUUAAUGAAGGGA - 73
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290