Stem-loop sbi-MIR5568e

Accession

MI0023532

Description

Sorghum bicolor sbi-MIR5568e precursor miRNA

Literature search

2 open access papers mention sbi-MIR5568e
(3 sentences)

Sequence

uauuuuacuaccuccauuccuauuuauaaGAUGUUUUGGGUUUUCUAGAUauauaucucuugcuauguacuuggauauauacauuacgucuagaaacauaguaaaaccagugugUAUCUAGAAAAGCUAAAACGUguauaauuugaaauagagggaguacuaua
.....((((.((((.(((.(...(((((..(((((((((.((((((((((((((((...(((((((((..((((((.((.....)).))))))..))))))))).....)))))))))))))))).))))))))).)))))...).))).)))).)))).....

Structure

uauuu    a    c   c uau     aG         G                --cuc         ac      a  u 
     uacu ccuc auu c   uuaua  AUGUUUUGG UUUUCUAGAUauauau     uugcuaugu  uuggau ua a
     |||| |||| ||| |   |||||  ||||||||| ||||||||||||||||     |||||||||  |||||| || c
     auga ggag uaa g   aauau  UGCAAAAUC AAAAGAUCUAUgugug     aaugauaca  gaucug au a
auauc    g    a   a uuu     -g         G                accaa         aa      c  u 

Annotation confidence Not enough data

Genome context

chr9: 4815913-4816076 [+]

Mature sbi-miR5568e-5p

• Accession: MIMAT0026438
• Description: Sorghum bicolor sbi-miR5568e-5p mature miRNA
• Sequence: 30 - GAUGUUUUGGGUUUUCUAGAU - 50
• Evidence: not_experimental

Mature sbi-miR5568e-3p

• Accession: MIMAT0026439
• Description: Sorghum bicolor sbi-miR5568e-3p mature miRNA
• Sequence: 115 - UAUCUAGAAAAGCUAAAACGU - 135
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290