Stem-loop sbi-MIR5568f

Accession

MI0023534

Description

Sorghum bicolor sbi-MIR5568f precursor miRNA

Literature search

2 open access papers mention sbi-MIR5568f
(4 sentences)

Sequence

5588 reads, 164.0 reads per million, 50 experiments

guauuacuccaUCCAUUCCAAAUUGUAAGauguuuuggcuuuuccagauauacacuaugucuagauacauaguaaaagaaauguaucuagaaaaacucaaauguCUUAUAAUUUGGAAUGGAGAgaguagcuuguac
...((((((..((((((((((((((((((((((((.((.(((((.(((((((.(((((((......)))))))........))))))).))))).)).))))))))))))))))))))))))..)))))).......

Structure

----gua      ca                        u  c     c       -------c       cu 
       uuacuc  UCCAUUCCAAAUUGUAAGauguuu gg uuuuc agauaua        acuaugu  a
       ||||||  |||||||||||||||||||||||| || ||||| |||||||        |||||||   
       gaugag  AGGUAAGGUUUAAUAUUCuguaaa uc aaaag ucuaugu        ugauaca  g
cauguuc      AG                        c  a     a       aaagaaaa       ua 

Annotation confidence Low

Genome context

chr4: 63095416-63095552 [-]

Mature sbi-miR5568f-5p

• Accession: MIMAT0026442
• Description: Sorghum bicolor sbi-miR5568f-5p mature miRNA
• Sequence: 12 - UCCAUUCCAAAUUGUAAG - 29
• Evidence: not_experimental

Mature sbi-miR5568f-3p

• Accession: MIMAT0026443
• Description: Sorghum bicolor sbi-miR5568f-3p mature miRNA
• Sequence: 105 - CUUAUAAUUUGGAAUGGAGA - 124
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290