Stem-loop sbi-MIR6232b

Accession

MI0023536

Description

Sorghum bicolor sbi-MIR6232b precursor miRNA

Sequence

ugagaugaaagggauaagguaauaugauaauacucgaucuguuucgaauuauaagucgaguugauuUUUUUGGUACAUUGAAUUUGCaauguauguagacuagcaAAUUCGAUGUACCAAAAAAGUcaaacugacuuauaauuugaugaaauggauggaguacuaaagaauaguugccucccauugcuua
..........((((...((((((((..((.(((((.((((((((((((((((((((((..(((((((((((((((((((((((((((...((......))..)))))))))))))))))))))))))))..)))))))))))))...))))))))).))))).))....)).))))))))))........

Structure

ugagaugaaa    uaa      -  --ga  a     g         ---             ag                           aau  au 
          ggga   gguaau au    ua uacuc aucuguuuc   gaauuauaagucg  uugauuUUUUUGGUACAUUGAAUUUGC   gu  g
          ||||   |||||| ||    || ||||| |||||||||   |||||||||||||  |||||||||||||||||||||||||||   ||   
          cccu   ccguug ua    au augag uagguaaag   uuuaauauucagu  aacUGAAAAAACCAUGUAGCUUAAacg   ca  u
--auucguua    ---      a  agaa  c     g         uag             ca                           -au  ga 

Annotation confidence Not enough data

Genome context

chr4: 1616754-1616943 [+]

Mature sbi-miR6232b-5p

• Accession: MIMAT0026446
• Description: Sorghum bicolor sbi-miR6232b-5p mature miRNA
• Sequence: 67 - UUUUUGGUACAUUGAAUUUGC - 87
• Evidence: not_experimental

Mature sbi-miR6232b-3p

• Accession: MIMAT0026447
• Description: Sorghum bicolor sbi-miR6232b-3p mature miRNA
• Sequence: 106 - AAUUCGAUGUACCAAAAAAGU - 126
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290