Stem-loop sbi-MIR6234a

Accession

MI0023538

Description

Sorghum bicolor sbi-MIR6234a precursor miRNA

Sequence

cacucucgccuacucuuuuccguaugcAAGUGUGUUCCUCUAUUUGACGCUaaaggugggugcccccauugaaacacuucacaaauguugcuguugcauuugguaguauuuguaccuUUAGCGUCAAGAGACGAACACACUugcccaucgaaaaggacaagguguguagug
(((((.(((((..((((((.((...((((((((((((.(((.((((((((((((((((((....)))...(((....)))(((((((((((((.......))))))))))))))))))))))))))))))).))))))))))))....)).))))))..))))).).))))

Structure

    - u     ac      c  -uau            C   A               gggugcccccauugaaacacuuc             uu 
cacu c cgccu  ucuuuu cg    gcAAGUGUGUUC UCU UUUGACGCUaaaggu                       acaaauguugcug  g
|||| | |||||  |||||| ||    |||||||||||| ||| |||||||||||||||                       |||||||||||||  c
guga g gugga  aggaaa gc    cguUCACACAAG AGA GAACUGCGAUUucca                       uguuuaugauggu  a
    u u     ac      a  uacc            C   -               -----------------------             uu 

Annotation confidence Not enough data

Genome context

chr9: 47320352-47320522 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR6234a

Mature sbi-miR6234a-5p

• Accession: MIMAT0026450
• Description: Sorghum bicolor sbi-miR6234a-5p mature miRNA
• Sequence: 28 - AAGUGUGUUCCUCUAUUUGACGCU - 51
• Evidence: not_experimental

Mature sbi-miR6234a-3p

• Accession: MIMAT0026451
• Description: Sorghum bicolor sbi-miR6234a-3p mature miRNA
• Sequence: 118 - UUAGCGUCAAGAGACGAACACACU - 141
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290