Stem-loop sbi-MIR6234b

Accession

MI0023539

Description

Sorghum bicolor sbi-MIR6234b precursor miRNA

Sequence

ucuucucucuccacuacucucgccuacucuuuuccguaugcAAGUGUGUUCCUCUAUUUGACGCUaaaggugggugcccccauugaaacacuucacaaauguugcuguugcauuugguaguauucguaccuUUAGCGUCAAGAGACGAACACACUugcccaucgaaaacgacaagguguguaguguuggaacaagaaga
((((((...((((.(((((.(((((..(((((((.((..((((((((((((.(((.(((((((((((((((((((((..(((.((.(((((..((....))..).)))).))..)))..))))))..)))))))))))))))))).))))))))))))..)).))))).))..))))).).)))).))))...))))))

Structure

      cuc    c    - u     ac  -     c  au            C   A               --      cc   -u  a    - uu  c 
ucuucu   ucca uacu c cgccu  uc uuuuc gu  gcAAGUGUGUUC UCU UUUGACGCUaaaggu  gggugc  cca  ug aaca c  ca a
||||||   |||| |||| | |||||  || ||||| ||  |||||||||||| ||| |||||||||||||||  ||||||  |||  || |||| |  ||  
agaaga   aggu guga g gugga  ag aaaag ua  cguUCACACAAG AGA GAACUGCGAUUucca  cuuaug  ggu  ac uugu g  gu a
      aca    u    u u     ac  c     c  cc            C   -               ug      au   uu  g    c uu  a 

Annotation confidence Not enough data

Genome context

chr9: 47322610-47322808 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR6234b

Mature sbi-miR6234b-5p

• Accession: MIMAT0026452
• Description: Sorghum bicolor sbi-miR6234b-5p mature miRNA
• Sequence: 42 - AAGUGUGUUCCUCUAUUUGACGCU - 65
• Evidence: not_experimental

Mature sbi-miR6234b-3p

• Accession: MIMAT0026453
• Description: Sorghum bicolor sbi-miR6234b-3p mature miRNA
• Sequence: 132 - UUAGCGUCAAGAGACGAACACACU - 155
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290