Stem-loop ghr-MIR7492b

Accession

MI0024177

Description

Gossypium hirsutum ghr-MIR7492b precursor miRNA

Literature search

1 open access papers mention ghr-MIR7492b
(1 sentences)

Sequence

7126 reads, 318.0 reads per million, 49 experiments

aaaaacgucgCUAUAGAACAUGAUCUUUAGCGGcauuuuuauuucaaucaccacuaaagaauaugaucuuuaauggcauuuguuuucaaaugccacaagagagucgagcauguuggggcauuugaaguuagaaucuccgcaAAAGAUCAUGUUCUUUAGCGGuguuuguaguaaaa
..(((((((((((.((((((((((((((.((((.(((((.(((((((...((.((((......((((((((..(((((((((....)))))))))..))))).)))......))))))...))))))).)))))..)))).)))))))))))))).))))))))))).........

Structure

-------aa           U              A    -c     u       uca  a    agaaua   -     aa         u 
         aaacgucgCUA AGAACAUGAUCUUU GCGG  auuuu auuucaa   cc cuaa      uga ucuuu  uggcauuug u
         ||||||||||| |||||||||||||| ||||  ||||| |||||||   || ||||      ||| |||||  |||||||||  
         uuuguGGCGAU UCUUGUACUAGAAA cgcc  uaaga ugaaguu   gg gguu      gcu agaga  accguaaac u
aaaaugaug           U              a    uc     u       uac  -    guacga   g     ac         u 

Annotation confidence Low

Genome context

Unknown

Mature ghr-miR7492b-5p

• Accession: MIMAT0029135
• Description: Gossypium hirsutum ghr-miR7492b-5p mature miRNA
• Sequence: 11 - CUAUAGAACAUGAUCUUUAGCGG - 33
• Evidence: experimental ; Illumina [1]

Mature ghr-miR7492b-3p

• Accession: MIMAT0055322
• Description: Gossypium hirsutum ghr-miR7492b-3p mature miRNA
• Sequence: 142 - AAAGAUCAUGUUCUUUAGCGG - 162
• Evidence: experimental ; unknown

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900